SNP Detail For
snp_cf0045000000005
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1.General Information
SNP ID: | snp_cf0045000000005 |
---|---|
Organism: | Canis familiaris |
Individual: | LJ10 |
Create time: | 2014-07-19 |
Last update: | 2014-07-19 |
2.Allele Information
Platform: | SOLEXA |
---|---|
Method: | sequence |
SNP Class: | snp |
Genotype: | W |
5'flank: | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA |
3'flank: | AGCATCTTACTTCTGAGAGTTGAGCTCACC |
3.Reference Map information
Chrom | Position | Reference | LJ10 |
---|---|---|---|
Chr1 | 30097 | T | W |
4.Gene information
Gene model(s) | ||||||
---|---|---|---|---|---|---|
Gene ID | Position in Gene | Strands | Gene Allele | Location | ||
NA | NA | NA | NA | NA | ||
Transcript | Protein | |||||
SNP to transcript | Accession | Position in Transcript | Allele change | Accession | Position in Protein | Residue change |
NA | NA | NA | NA | NA | NA | NA |
5.SNPs of other individuals in this position
SNP_ID | Individual | Genotype | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Create time | Last update time |
---|---|---|---|---|---|---|
snp_cf0048000000005 | LJ3 | W | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0077000000008 | YJ8 | A | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0038000000005 | KM3 | W | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0061000000002 | TM2 | W | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0076000000003 | YJ7 | A | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0041000000004 | KM6 | W | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0036000000006 | KM1 | W | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0039000000007 | KM4 | W | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0034000000009 | ISW | W | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0066000000007 | TM7 | W | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0037000000004 | KM2 | W | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0063000000003 | TM4 | W | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0047000000003 | LJ2 | A | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0075000000008 | YJ6 | A | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
snp_cf0030000000002 | GS6 | W | ACGTGAGAAGGTAGCTAACGCCTTGTCCAA | AGCATCTTACTTCTGAGAGTTGAGCTCACC | 2014-07-19 | 2014-07-19 |
6.Fasta Information
CTACATACTA | AGTTCAATAT | ACGTGAGAAG | GTAGCTAACG | CCTTGTCCAA |
W | ||||
AGCATCTTAC | TTCTGAGAGT | TGAGCTCACC | CTCAGTCTCT | CACAGTTCCA |