SNP Detail For
snp_cf0045000000006
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1.General Information
SNP ID: | snp_cf0045000000006 |
---|---|
Organism: | Canis familiaris |
Individual: | LJ10 |
Create time: | 2014-07-19 |
Last update: | 2014-07-19 |
2.Allele Information
Platform: | SOLEXA |
---|---|
Method: | sequence |
SNP Class: | snp |
Genotype: | K |
5'flank: | CTCAGACGGTATCTCCAGGTGCAGTAGAGT |
3'flank: | GTAATCTTGGAACCTACTGACTCAGAATAC |
3.Reference Map information
Chrom | Position | Reference | LJ10 |
---|---|---|---|
Chr1 | 30259 | T | K |
4.Gene information
Gene model(s) | ||||||
---|---|---|---|---|---|---|
Gene ID | Position in Gene | Strands | Gene Allele | Location | ||
NA | NA | NA | NA | NA | ||
Transcript | Protein | |||||
SNP to transcript | Accession | Position in Transcript | Allele change | Accession | Position in Protein | Residue change |
NA | NA | NA | NA | NA | NA | NA |
5.SNPs of other individuals in this position
SNP_ID | Individual | Genotype | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Create time | Last update time |
---|---|---|---|---|---|---|
snp_cf0074000000006 | YJ5 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0019000000006 | FAMBGSD00001 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0013000000004 | DQ5 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0010000000008 | DQ2 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0004000000005 | Basenji | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0068000000006 | TM9 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0022000000006 | FAMICHN00002 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0007000000006 | Dingo | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0053000000005 | LJ8 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0075000000011 | YJ6 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0059000000005 | TM10 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0044000000004 | KM9 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0065000000006 | TM6 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0016000000012 | DQ8 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0071000000006 | YJ2 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0062000000003 | TM3 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0056000000007 | LUPWRUS00001 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0029000000004 | GS5 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0023000000009 | FAMICHN00003 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0041000000005 | KM6 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0076000000006 | YJ7 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0077000000010 | YJ8 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0035000000007 | KM10 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0017000000006 | DQ9 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0064000000002 | TM5 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0069000000006 | YJ10 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0063000000006 | TM4 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0070000000008 | YJ1 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0040000000008 | KM5 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0011000000009 | DQ3 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0046000000008 | LJ1 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0028000000003 | GS4 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0052000000007 | LJ7 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0042000000008 | KM7 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0048000000008 | LJ3 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0009000000010 | DQ1 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0036000000009 | KM1 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0057000000008 | LUPWRUS00002 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0058000000011 | LUPWRUS00003 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0054000000004 | LJ9 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0039000000008 | KM4 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0008000000004 | DQ10 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0024000000006 | GS10 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0015000000009 | DQ7 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0060000000007 | TM1 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0027000000008 | GS3 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0021000000008 | FAMICHN00001 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0018000000006 | FAMBBEM00001 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0033000000003 | GS9 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0012000000005 | DQ4 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0034000000012 | ISW | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0006000000008 | CRW | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0030000000003 | GS6 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0067000000003 | TM8 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0051000000010 | LJ6 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0061000000005 | TM2 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0038000000008 | KM3 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0055000000007 | LUPWCHN00001 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0049000000008 | LJ4 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0073000000006 | YJ4 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0026000000005 | GS2 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0032000000005 | GS8 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0066000000008 | TM7 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0037000000007 | KM2 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0031000000007 | GS7 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0050000000011 | LJ5 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0072000000004 | YJ3 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0014000000009 | DQ6 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0025000000006 | GS1 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0078000000007 | YJ9 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0020000000006 | FAMBTIM00001 | K | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
snp_cf0043000000007 | KM8 | G | CTCAGACGGTATCTCCAGGTGCAGTAGAGT | GTAATCTTGGAACCTACTGACTCAGAATAC | 2014-07-19 | 2014-07-19 |
6.Fasta Information
AGGCAACTTA | ACAATGCAGA | CTCAGACGGT | ATCTCCAGGT | GCAGTAGAGT |
K | ||||
GTAATCTTGG | AACCTACTGA | CTCAGAATAC | TGCTACCTTC | TCACTGCCAT |