SNP Detail For
snp_cf0060000000009
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1.General Information
SNP ID: | snp_cf0060000000009 |
---|---|
Organism: | Canis familiaris |
Individual: | TM1 |
Create time: | 2014-07-19 |
Last update: | 2014-07-19 |
2.Allele Information
Platform: | SOLEXA |
---|---|
Method: | sequence |
SNP Class: | snp |
Genotype: | T |
5'flank: | GTCAGTTTTCAAGATAGCCTTAAAGAATAA |
3'flank: | AGTCTGCAGCATGGAATCCCACTGCACAGC |
3.Reference Map information
Chrom | Position | Reference | TM1 |
---|---|---|---|
Chr1 | 34191 | G | T |
4.Gene information
Gene model(s) | ||||||
---|---|---|---|---|---|---|
Gene ID | Position in Gene | Strands | Gene Allele | Location | ||
NA | NA | NA | NA | NA | ||
Transcript | Protein | |||||
SNP to transcript | Accession | Position in Transcript | Allele change | Accession | Position in Protein | Residue change |
NA | NA | NA | NA | NA | NA | NA |
5.SNPs of other individuals in this position
SNP_ID | Individual | Genotype | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Create time | Last update time |
---|---|---|---|---|---|---|
snp_cf0071000000008 | YJ2 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0013000000006 | DQ5 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0038000000013 | KM3 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0009000000012 | DQ1 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0045000000008 | LJ10 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0073000000011 | YJ4 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0032000000010 | GS8 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0041000000010 | KM6 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0068000000008 | TM9 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0004000000007 | Basenji | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0061000000010 | TM2 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0023000000016 | FAMICHN00003 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0018000000011 | FAMBBEM00001 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0070000000011 | YJ1 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0049000000013 | LJ4 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0040000000013 | KM5 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0043000000012 | KM8 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0014000000011 | DQ6 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0046000000013 | LJ1 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0039000000011 | KM4 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0059000000007 | TM10 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0044000000006 | KM9 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0012000000007 | DQ4 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0053000000008 | LJ8 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0037000000012 | KM2 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0062000000005 | TM3 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0063000000011 | TM4 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0019000000012 | FAMBGSD00001 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0025000000011 | GS1 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0022000000010 | FAMICHN00002 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0064000000004 | TM5 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0016000000014 | DQ8 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0010000000010 | DQ2 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0074000000010 | YJ5 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0042000000013 | KM7 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0067000000007 | TM8 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0035000000009 | KM10 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0036000000014 | KM1 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0017000000010 | DQ9 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0027000000013 | GS3 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0078000000009 | YJ9 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0015000000013 | DQ7 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0020000000008 | FAMBTIM00001 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0052000000009 | LJ7 | T | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
snp_cf0069000000009 | YJ10 | K | GTCAGTTTTCAAGATAGCCTTAAAGAATAA | AGTCTGCAGCATGGAATCCCACTGCACAGC | 2014-07-19 | 2014-07-19 |
6.Fasta Information
AGAGCTTTTC | TATGTACAAA | GTCAGTTTTC | AAGATAGCCT | TAAAGAATAA |
T | ||||
AGTCTGCAGC | ATGGAATCCC | ACTGCACAGC | CACCCAGGAG | GCCCGTGCTC |