SNP Detail For
snp_cf0062000922736
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1.General Information
SNP ID: | snp_cf0062000922736 |
---|---|
Organism: | Canis familiaris |
Individual: | TM3 |
Create time: | 2014-07-19 |
Last update: | 2014-07-19 |
2.Allele Information
Platform: | SOLEXA |
---|---|
Method: | sequence |
SNP Class: | snp |
Genotype: | S |
5'flank: | TGCTCCCCCGTGGCAAGGTATGGTGAGACC |
3'flank: | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA |
3.Reference Map information
Chrom | Position | Reference | TM3 |
---|---|---|---|
Chr15 | 468906 | C | S |
4.Gene information
Gene model(s) | ||||||
---|---|---|---|---|---|---|
Gene ID | Position in Gene | Strands | Gene Allele | Location | ||
ENSCAFG00000002500 | 4990 | + | C | intron | ||
Transcript | Protein | |||||
SNP to transcript | Accession | Position in Transcript | Allele change | Accession | Position in Protein | Residue change |
NA | NA | NA | NA | NA | NA | NA |
5.SNPs of other individuals in this position
SNP_ID | Individual | Genotype | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Create time | Last update time |
---|---|---|---|---|---|---|
snp_cf0050000851536 | LJ5 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0063000903233 | TM4 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0014000907497 | DQ6 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0068000881367 | TM9 | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0071000940040 | YJ2 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0064000928209 | TM5 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0072000941620 | YJ3 | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0015000920143 | DQ7 | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0077000937454 | YJ8 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0023000871226 | FAMICHN00003 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0012000922899 | DQ4 | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0041000901837 | KM6 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0059000929676 | TM10 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0018000764859 | FAMBBEM00001 | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0070000967688 | YJ1 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0074000935181 | YJ5 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0034001081744 | ISW | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0056001167658 | LUPWRUS00001 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0021000879139 | FAMICHN00001 | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0058001147317 | LUPWRUS00003 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0057001112893 | LUPWRUS00002 | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0002000599717 | CID1 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-08-02 | 2014-08-02 |
snp_cf0017000935259 | DQ9 | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0035000894611 | KM10 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0076000945593 | YJ7 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0004000758454 | Basenji | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0007000776022 | Dingo | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0020000911534 | FAMBTIM00001 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0043000762334 | KM8 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0065000900381 | TM6 | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0061000932437 | TM2 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0066000937889 | TM7 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0016000917053 | DQ8 | S | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0069000950626 | YJ10 | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
snp_cf0005001130630 | CHW | G | TGCTCCCCCGTGGCAAGGTATGGTGAGACC | GCCAAGTTCCCCAACTCAAAGTGGTGGCTA | 2014-07-19 | 2014-07-19 |
6.Fasta Information
GAGCTGTAGA | GCTGGACGCC | TGCTCCCCCG | TGGCAAGGTA | TGGTGAGACC |
S | ||||
GCCAAGTTCC | CCAACTCAAA | GTGGTGGCTA | TTTATGTGGG | AAGACCCTTT |